Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0167Beta-lactamase-like. (212 aa)    
Predicted Functional Partners:
Rfer_2552
Glyoxalase I.
 
 0.937
Rfer_2801
Lactoylglutathione lyase.
  
 0.916
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
  
0.912
Rfer_1477
FAD linked oxidase-like.
    
 0.904
Rfer_0166
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
  
  
 0.546
Rfer_0885
BFD-like (2Fe-2S)-binding protein.
  
 0.546
Rfer_0168
Conserved hypothetical protein.
       0.526
Rfer_0165
Amidase, hydantoinase/carbamoylase.
  
  
 0.461
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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