STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0169Secretion protein HlyD. (356 aa)    
Predicted Functional Partners:
Rfer_0171
ABC-2.
 
  
 0.971
Rfer_0170
Response regulator receiver domain protein.
 
  
 0.964
Rfer_0858
ABC-2.
 
  
 0.786
Rfer_0857
ABC-2.
 
  
 0.763
Rfer_0859
ABC transporter related.
 
  
 0.656
Rfer_0860
ABC transporter related.
 
  
 0.654
Rfer_2064
RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.623
Rfer_3762
Type I secretion outer membrane protein, TolC.
  
 
 0.619
Rfer_2604
Type I secretion outer membrane protein, TolC.
  
 
 0.609
Rfer_2722
ABC transporter related.
  
 
 0.604
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.