Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0169Secretion protein HlyD. (356 aa)    
Predicted Functional Partners:
Rfer_0171
ABC-2.
 
  
 0.969
Rfer_0170
Response regulator receiver domain protein.
 
  
 0.963
Rfer_0858
ABC-2.
 
  
 0.788
Rfer_0857
ABC-2.
 
  
 0.773
Rfer_0860
ABC transporter related.
 
  
 0.651
Rfer_0859
ABC transporter related.
 
  
 0.649
Rfer_2064
RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.622
Rfer_2604
Type I secretion outer membrane protein, TolC.
  
 
 0.609
Rfer_1527
Protein of unknown function DUF214.
  
  
 0.600
Rfer_2722
ABC transporter related.
  
 
 0.596
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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