Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0171ABC-2. (375 aa)    
Predicted Functional Partners:
Rfer_0169
Secretion protein HlyD.
 
  
 0.969
Rfer_0170
Response regulator receiver domain protein.
 
  
0.923
Rfer_0860
ABC transporter related.
  
 0.806
Rfer_0859
ABC transporter related.
 
  
 0.796
Rfer_0861
Secretion protein HlyD.
 
  
 0.784
Rfer_2565
Protein of unknown function DUF181.
  
  
 0.522
Rfer_3201
ABC transporter related.
 
  
 0.496
Rfer_0172
Hypothetical protein.
  
    0.477
Rfer_0382
Conserved hypothetical protein.
  
  
 0.450
Rfer_0865
Hypothetical protein.
  
  
 0.450
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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