Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0183Phosphonate uptake transporter. (267 aa)    
Predicted Functional Partners:
Rfer_0184
Phosphonate-binding periplasmic protein.
 
 0.998
phnC1
Phosphonate ABC transporter PhnC, ATP-binding; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.993
Rfer_1615
Phosphonate-binding periplasmic protein.
 
 
 0.963
phnC2
ABC transporter related; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.960
Rfer_1617
Phosphonate uptake transporter.
  
  
 
0.921
Rfer_1618
Phosphonate uptake transporter.
  
  
 
0.919
Rfer_0143
Phosphonate metabolism.
 
  
 0.710
Rfer_0144
Phosphonate metabolism.
 
  
 0.694
Rfer_3095
Phosphonate-binding periplasmic protein.
 
  
 0.686
Rfer_0141
Phosphonate C-P lyase system, PhnK.
 
  
 0.669
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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