Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_0187Phage SPO1 DNA polymerase-related protein. (296 aa)    
Predicted Functional Partners:
Rfer_0189
Peptidase M22, glycoprotease.
  
    0.875
Rfer_0188
SSU ribosomal protein S18P alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.800
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.591
Rfer_0191
D-Ala-D-Ala carboxypeptidase PBP3. Serine peptidase. MEROPS family S13.
       0.558
Rfer_3298
NAD-dependent epimerase/dehydratase.
 
     0.540
Rfer_3772
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.513
Rfer_2780
Peptidase M23B.
  
   0.503
Rfer_0190
Protein of unknown function DUF6, transmembrane.
       0.492
Rfer_1308
Carboxyl-terminal protease; Belongs to the peptidase S41A family.
  
    0.484
Rfer_3715
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.454
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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