Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0200Protein of unknown function DUF162. (224 aa)    
Predicted Functional Partners:
Rfer_0199
Iron-sulfur cluster binding protein.
 
 
 0.997
Rfer_0201
Protein of unknown function DUF224, cysteine-rich protein.
 
 
 0.981
Rfer_1288
FAD linked oxidase-like.
  
 
 0.779
Rfer_0262
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.768
Rfer_0202
Transcriptional regulator, GntR family.
 
   
 0.720
Rfer_2374
Putative ferredoxin.
 
 
 0.717
Rfer_0481
Protein of unknown function DUF224, cysteine-rich protein.
 
 
 0.716
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
  
 0.605
Rfer_0093
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase.
  
  
 0.528
Rfer_1424
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase.
  
  
 0.528
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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