Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0218Conserved hypothetical protein. (154 aa)    
Predicted Functional Partners:
Rfer_0217
3,4-dehydroadipyl-CoA semialdehyde dehydrogenase.
 
     0.910
Rfer_0215
Alpha/beta hydrolase.
 
     0.903
Rfer_0214
Extracellular ligand-binding receptor.
 
     0.902
aroK
Transcriptional regulator, XRE family with shikimate kinase activity; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
     0.902
Rfer_0220
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme.
 
     0.881
Rfer_0216
benzoate-CoA ligase.
 
     0.880
Rfer_0221
benzoyl-CoA oxygenase, component B.
 
     0.848
Rfer_0222
benzoyl-CoA oxygenase, component A.
 
     0.848
Rfer_0211
ABC transporter related.
 
     0.783
Rfer_0228
benzoyl-CoA oxygenase, component B.
 
     0.767
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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