Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0225MaoC-like dehydratase. (151 aa)    
Predicted Functional Partners:
Rfer_0222
benzoyl-CoA oxygenase, component A.
 
 
 0.869
Rfer_0226
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.863
Rfer_0223
Enoyl-CoA hydratase/isomerase.
  
 0.831
Rfer_0224
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.822
Rfer_0221
benzoyl-CoA oxygenase, component B.
 
  
 0.793
Rfer_0220
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme.
 
 0.765
Rfer_2386
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase.
  
 0.603
Rfer_2595
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.603
Rfer_2754
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase.
  
 0.603
Rfer_3517
3-hydroxyacyl-CoA dehydrogenase.
  
 0.603
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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