STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0230Transcriptional regulator, XRE family with cupin sensor domain. (197 aa)    
Predicted Functional Partners:
Rfer_2278
Transcriptional regulator, MerR family.
 
 
0.678
Rfer_0231
FAD dependent oxidoreductase.
 
  
 0.669
Rfer_1202
UvrD/REP helicase.
  
  
 0.540
Rfer_2679
Polysaccharide biosynthesis protein CapD.
  
  
 0.508
Rfer_0229
Hypothetical protein.
       0.478
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.465
Rfer_1768
Multi-sensor hybrid histidine kinase.
     
 0.462
Rfer_2262
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
  
 0.457
Rfer_0232
Extracellular solute-binding protein, family 3.
     
 0.432
Rfer_0702
Undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.428
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.