Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_0231FAD dependent oxidoreductase. (427 aa)    
Predicted Functional Partners:
Rfer_0350
L-glutamine synthetase.
 
  
 0.780
Rfer_0351
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.737
Rfer_0349
Peptidase C26.
 
  
 0.698
Rfer_0373
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.685
Rfer_0885
BFD-like (2Fe-2S)-binding protein.
 
 
 0.677
Rfer_0230
Transcriptional regulator, XRE family with cupin sensor domain.
 
  
 0.670
Rfer_0232
Extracellular solute-binding protein, family 3.
     
 0.610
Rfer_0233
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
       0.573
Rfer_0592
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.573
Rfer_0234
ABC transporter related.
       0.571
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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