Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0264acyl-CoA dehydrogenase-like. (569 aa)    
Predicted Functional Partners:
Rfer_2754
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase.
 
 0.837
Rfer_3517
3-hydroxyacyl-CoA dehydrogenase.
  
 0.808
Rfer_2386
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase.
  
 0.807
Rfer_2595
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.807
Rfer_1958
Electron transfer flavoprotein, alpha subunit.
 
 
 0.737
Rfer_4165
Electron transfer flavoprotein, alpha subunit.
 
 
 0.737
Rfer_0265
Porin, gram-negative type.
       0.732
Rfer_0274
Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.667
Rfer_1957
Electron transfer flavoprotein beta-subunit.
 
 
 0.656
Rfer_4166
Electron transfer flavoprotein beta-subunit.
 
 
 0.656
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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