Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0271Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (254 aa)    
Predicted Functional Partners:
Rfer_0270
4-hydroxybenzoyl-CoA thioesterase.
     
 0.781
Rfer_0273
AMP-dependent synthetase and ligase.
 
   0.651
Rfer_0274
Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.638
Rfer_2145
AMP-dependent synthetase and ligase.
  
 
 0.628
Rfer_0272
Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.617
Rfer_0269
Extracellular ligand-binding receptor.
   
   0.611
Rfer_1849
(Acyl-carrier protein) S-malonyltransferase.
 
 
 0.519
Rfer_2259
Ankyrin.
   
 0.504
Rfer_1246
Short-chain dehydrogenase/reductase SDR.
  
     0.491
Rfer_0264
acyl-CoA dehydrogenase-like.
  
  0.488
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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