Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_0306NADH:flavin oxidoreductase/NADH oxidase. (358 aa)    
Predicted Functional Partners:
Rfer_0476
NADH:flavin oxidoreductase/NADH oxidase.
  
  
 
0.909
Rfer_0404
NADH:flavin oxidoreductase/NADH oxidase.
  
  
 
0.907
Rfer_1813
NADH:flavin oxidoreductase/NADH oxidase.
  
  
 
0.903
Rfer_0307
Alpha/beta hydrolase.
  
  
 0.736
Rfer_0304
Alcohol dehydrogenase, zinc-binding.
 
  
 0.669
Rfer_0305
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.669
Rfer_0308
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.594
Rfer_0309
Alcohol dehydrogenase, zinc-binding.
  
  
 0.531
Rfer_0313
NADH:flavin oxidoreductase/NADH oxidase.
 
    
0.508
Rfer_0310
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.501
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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