Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_0331Protocatechuate 4,5-dioxygenase. (147 aa)    
Predicted Functional Partners:
Rfer_0330
Protocatechuate 4,5-dioxygenase.
  
  0.997
Rfer_0332
Amidohydrolase 2.
 
  
 0.995
Rfer_0329
Oxidoreductase-like.
 
  
 0.994
Rfer_0294
Protocatechuate 4,5-dioxygenase.
  
  0.982
Rfer_0280
Rieske (2Fe-2S) protein.
 
  
 0.972
Rfer_0339
4-hydroxybenzoate 3-monooxygenase.
 
 
 0.960
Rfer_0281
Ferredoxin.
 
  
 0.930
Rfer_0295
Extradiol ring-cleavage dioxygenase LigAB, LigA subunit.
  
  
 
0.910
Rfer_0337
Dimethylmenaquinone methyltransferase.
 
   
 0.806
Rfer_0338
Amidohydrolase 2.
 
   
 0.794
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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