Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| Rfer_0341 | Rfer_0342 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Aldo/keto reductase. | 0.475 |
| Rfer_0342 | Rfer_0341 | Aldo/keto reductase. | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.475 |
| Rfer_0342 | Rfer_0343 | Aldo/keto reductase. | Protein of unknown function DUF6, transmembrane. | 0.580 |
| Rfer_0342 | Rfer_0344 | Aldo/keto reductase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.536 |
| Rfer_0342 | Rfer_0345 | Aldo/keto reductase. | Hypothetical protein. | 0.489 |
| Rfer_0342 | Rfer_1900 | Aldo/keto reductase. | RbsD or FucU transport; Belongs to the RbsD / FucU family. | 0.540 |
| Rfer_0343 | Rfer_0342 | Protein of unknown function DUF6, transmembrane. | Aldo/keto reductase. | 0.580 |
| Rfer_0343 | Rfer_0344 | Protein of unknown function DUF6, transmembrane. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.696 |
| Rfer_0343 | Rfer_0345 | Protein of unknown function DUF6, transmembrane. | Hypothetical protein. | 0.646 |
| Rfer_0344 | Rfer_0342 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Aldo/keto reductase. | 0.536 |
| Rfer_0344 | Rfer_0343 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Protein of unknown function DUF6, transmembrane. | 0.696 |
| Rfer_0344 | Rfer_0345 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Hypothetical protein. | 0.732 |
| Rfer_0345 | Rfer_0342 | Hypothetical protein. | Aldo/keto reductase. | 0.489 |
| Rfer_0345 | Rfer_0343 | Hypothetical protein. | Protein of unknown function DUF6, transmembrane. | 0.646 |
| Rfer_0345 | Rfer_0344 | Hypothetical protein. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.732 |
| Rfer_1900 | Rfer_0342 | RbsD or FucU transport; Belongs to the RbsD / FucU family. | Aldo/keto reductase. | 0.540 |