STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0469Diguanylate cyclase/phosphodiesterase. (764 aa)    
Predicted Functional Partners:
Rfer_0470
CheW protein.
       0.752
Rfer_3932
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
 
 
0.705
Rfer_3370
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.652
Rfer_3250
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
 
 
0.650
Rfer_1982
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.643
Rfer_1719
Diguanylate cyclase.
 
   
 0.641
Rfer_1825
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.627
Rfer_3192
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.574
Rfer_1897
Diguanylate cyclase/phosphodiesterase.
 
 
0.553
Rfer_2485
Diguanylate cyclase/phosphodiesterase.
 
 
0.553
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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