Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0474Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (294 aa)    
Predicted Functional Partners:
Rfer_0475
Putative oxidoreductase protein.
 
     0.622
Rfer_1639
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.580
Rfer_1922
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.547
Rfer_2112
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.488
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.483
Rfer_0844
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.475
Rfer_4071
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.474
Rfer_0476
NADH:flavin oxidoreductase/NADH oxidase.
       0.462
Rfer_0131
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.459
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 
 0.442
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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