STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0486Protein of unknown function DUF6, transmembrane. (312 aa)    
Predicted Functional Partners:
Rfer_0487
Major facilitator superfamily MFS_1.
       0.810
Rfer_1400
Putative membrane protein.
  
     0.589
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
    0.587
Rfer_3320
Putative transmembrane protein.
  
     0.582
Rfer_0485
Conserved hypothetical protein.
       0.563
Rfer_0489
HD-GYP domain-like.
       0.536
Rfer_0484
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
    0.526
Rfer_0535
General secretion pathway protein H.
  
    0.514
Rfer_3803
VanZ like protein.
  
     0.476
Rfer_1718
Uncharacterized enzyme of heme biosynthesis-like.
 
     0.415
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.