Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0499Hypothetical protein. (245 aa)    
Predicted Functional Partners:
Rfer_3270
NADH dehydrogenase (quinone).
   
  0.874
Rfer_3858
Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
   
  0.874
Rfer_3235
AAA ATPase.
   
 0.871
Rfer_0497
Oxidoreductase FAD/NAD(P)-binding.
 
   
 0.860
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.850
Rfer_2145
AMP-dependent synthetase and ligase.
  
 
 0.808
Rfer_0498
Hypothetical protein.
       0.805
Rfer_0832
Heat shock protein 70.
  
 0.787
Rfer_1948
Molecular chaperone, Hsp70 class.
  
 0.787
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.787
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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