Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_0504Periplasmic sensor signal transduction histidine kinase. (450 aa)    
Predicted Functional Partners:
Rfer_0503
Two component transcriptional regulator, winged helix family.
 
 0.996
Rfer_2540
Two component transcriptional regulator, winged helix family.
 
 0.978
Rfer_2786
Two component, sigma54 specific, transcriptional regulator, Fis family.
   
 0.915
Rfer_3820
Two component transcriptional regulator, winged helix family.
 
 
 0.854
Rfer_1091
Two component transcriptional regulator, winged helix family.
 
 
 0.849
Rfer_3950
Two component transcriptional regulator, winged helix family.
 
 
 0.847
Rfer_1768
Multi-sensor hybrid histidine kinase.
  
 
 0.845
Rfer_3523
Two component transcriptional regulator, winged helix family.
 
 
 0.842
Rfer_3120
Two component transcriptional regulator, winged helix family.
 
 
 0.839
Rfer_2401
Two component transcriptional regulator, winged helix family.
 
 
 0.837
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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