STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0657Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (188 aa)    
Predicted Functional Partners:
Rfer_3410
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 
0.911
Rfer_0658
Polysaccharide export protein.
  
  
 0.578
Rfer_0660
Protein-tyrosine kinase.
  
 
 0.557
Rfer_0659
Lipopolysaccharide biosynthesis.
  
 
 0.507
Rfer_3663
Bile acid:sodium symporter.
  
  
 0.486
Rfer_2666
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.461
Rfer_0462
Transcriptional regulator, ArsR family.
  
 
 0.450
Rfer_2299
HflC protein; HflC and HflK could regulate a protease.
  
    0.448
Rfer_0198
Thioredoxin.
  
 
 0.436
Rfer_1123
Thioredoxin.
  
 
 0.436
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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