Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Rfer_0675Glycosyl transferase, group 1. (376 aa)    
Predicted Functional Partners:
Rfer_0676
Putative CapK protein.
 
     0.935
Rfer_0677
O-antigen polymerase.
 
  
 0.930
Rfer_0678
Polysaccharide deacetylase.
 
  
 0.923
Rfer_0672
Glycosyl transferase, group 1.
 
     0.901
Rfer_0673
GDP-mannose 6-dehydrogenase.
 
  
 0.892
Rfer_0671
Asparagine synthase, glutamine-hydrolyzing.
 
  
 0.826
Rfer_0674
Conserved hypothetical protein.
       0.773
Rfer_0666
Conserved hypothetical protein.
 
   
 0.757
Rfer_0669
Asparagine synthase, glutamine-hydrolyzing.
 
  
 0.745
Rfer_0667
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.740
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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