STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0675Glycosyl transferase, group 1. (376 aa)    
Predicted Functional Partners:
Rfer_0676
Putative CapK protein.
 
     0.935
Rfer_0677
O-antigen polymerase.
 
  
 0.929
Rfer_0678
Polysaccharide deacetylase.
 
  
 0.924
Rfer_0672
Glycosyl transferase, group 1.
 
     0.901
Rfer_0673
GDP-mannose 6-dehydrogenase.
 
  
 0.901
Rfer_0671
Asparagine synthase, glutamine-hydrolyzing.
 
  
 0.827
Rfer_0674
Conserved hypothetical protein.
       0.773
Rfer_0666
Conserved hypothetical protein.
 
   
 0.759
Rfer_0667
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.749
Rfer_0669
Asparagine synthase, glutamine-hydrolyzing.
 
  
 0.746
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.