Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_0701Conserved hypothetical protein. (652 aa)    
Predicted Functional Partners:
Rfer_0700
Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.901
Rfer_0699
AMP-dependent synthetase and ligase.
 
     0.870
Rfer_0697
Esterase/lipase/thioesterase family active site.
 
     0.862
Rfer_0703
Periplasmic sensor signal transduction histidine kinase.
 
     0.843
Rfer_0705
Tetratricopeptide TPR_2.
 
     0.841
Rfer_0698
Conserved hypothetical protein.
 
     0.838
Rfer_0709
Conserved hypothetical protein.
 
    0.811
Rfer_0708
Hpr(Ser) kinase/phosphatase.
 
     0.785
Rfer_0661
Conserved hypothetical protein.
 
     0.780
Rfer_0694
Esterase/lipase/thioesterase family active site.
 
     0.778
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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