STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0747CoA-binding. (140 aa)    
Predicted Functional Partners:
Rfer_0748
Cytochrome c biogenesis protein, transmembrane protein.
       0.833
Rfer_1327
O-acetylhomoserine/O-acetylserine sulfhydrylase.
      0.703
Rfer_3160
O-acetylhomoserine/O-acetylserine sulfhydrylase.
      0.604
fur
Ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.561
Rfer_2054
Putative ferric uptake regulator, FUR family.
  
    0.561
Rfer_0749
Protein of unknown function DUF167; Belongs to the UPF0235 family.
       0.536
Rfer_0746
Cytochrome c-like protein.
       0.531
Rfer_0745
Diheme cytochrome c.
       0.527
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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