Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0791ATPase. (452 aa)    
Predicted Functional Partners:
Rfer_0792
Flp pilus assembly CpaB.
 
    0.965
Rfer_0790
Peptidase A24A, prepilin type IV.
 
     0.942
Rfer_0801
Type II secretion system protein.
 
    0.937
Rfer_0800
Type II secretion system protein.
 
    0.932
Rfer_0798
Response regulator receiver domain protein.
 
    0.930
Rfer_0793
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.915
Rfer_0795
Conserved hypothetical protein.
 
    0.912
Rfer_0799
Type II secretion system protein E.
 
     0.891
Rfer_0797
TadE-like.
 
    0.859
Rfer_0802
Tetratricopeptide TPR_2.
 
   
 0.798
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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