STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0793Type II and III secretion system protein; Belongs to the bacterial secretin family. (571 aa)    
Predicted Functional Partners:
Rfer_0792
Flp pilus assembly CpaB.
 
  
 0.984
Rfer_0799
Type II secretion system protein E.
  
 0.969
Rfer_0798
Response regulator receiver domain protein.
 
  
 0.967
Rfer_0800
Type II secretion system protein.
 
  
 0.961
Rfer_0801
Type II secretion system protein.
 
  
 0.957
Rfer_0790
Peptidase A24A, prepilin type IV.
 
  
 0.952
Rfer_0795
Conserved hypothetical protein.
 
  
 0.944
Rfer_0797
TadE-like.
 
  
 0.929
Rfer_0789
Flp/Fap pilin component.
 
  
 0.926
Rfer_0791
ATPase.
 
     0.909
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.