STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0802Tetratricopeptide TPR_2. (362 aa)    
Predicted Functional Partners:
Rfer_0801
Type II secretion system protein.
 
   
 0.872
Rfer_0795
Conserved hypothetical protein.
 
   
 0.864
Rfer_0798
Response regulator receiver domain protein.
 
    0.847
Rfer_0800
Type II secretion system protein.
 
     0.833
Rfer_0793
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.803
Rfer_0799
Type II secretion system protein E.
 
     0.802
Rfer_0791
ATPase.
 
   
 0.798
Rfer_0797
TadE-like.
 
   
 0.794
Rfer_0792
Flp pilus assembly CpaB.
 
    0.774
Rfer_0790
Peptidase A24A, prepilin type IV.
 
     0.769
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.