STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0803Ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family. (541 aa)    
Predicted Functional Partners:
Rfer_2933
Glutamate synthase (NADH) large subunit.
 
 
0.962
Rfer_2934
Glutamate synthase (NADH) small subunit.
 
 0.848
Rfer_1891
2,4-dienoyl-CoA reductase.
 
 
 0.844
Rfer_3208
Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudB / sulfide dehydrogenase (flavoprotein) subunit SudA.
  
 
 0.834
Rfer_2800
4Fe-4S ferredoxin, iron-sulfur binding.
  
 
 0.823
Rfer_2184
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate.
 
 
 0.816
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.583
Rfer_0804
YgfB; YecA.
       0.565
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.540
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
 
 0.492
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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