Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0863Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding. (710 aa)    
Predicted Functional Partners:
Rfer_0864
(2Fe-2S)-binding.
 
 0.999
Rfer_0866
Protein of unknown function DUF182.
 
  
 0.942
Rfer_0867
Conserved hypothetical protein.
 
   
 0.814
Rfer_0865
Hypothetical protein.
     
 0.784
Rfer_0862
Flavin reductase-like, FMN-binding.
       0.780
Rfer_0857
ABC-2.
       0.686
Rfer_0858
ABC-2.
       0.686
Rfer_0859
ABC transporter related.
       0.686
Rfer_0860
ABC transporter related.
       0.686
Rfer_0861
Secretion protein HlyD.
       0.686
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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