STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0874Transcriptional regulator, GntR family. (226 aa)    
Predicted Functional Partners:
Rfer_0869
Conserved hypothetical protein.
 
     0.688
Rfer_3584
Transcriptional regulator, GntR family.
 
  
 0.637
Rfer_0447
Transcriptional regulator, GntR family.
 
  
 0.616
Rfer_0872
Protein of unknown function DUF979.
 
     0.524
Rfer_0873
Protein of unknown function DUF969.
 
     0.517
Rfer_1641
Transcriptional regulator, GntR family.
 
  
 0.508
pxpA
LamB/YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
     0.456
Rfer_0868
Carbamoyl-phosphate synthase L chain, ATP-binding.
 
     0.445
pcp
Pyroglutamyl-peptidase I. Cysteine peptidase. MEROPS family C15; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
       0.436
Rfer_0202
Transcriptional regulator, GntR family.
 
  
 0.433
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.