Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0874Transcriptional regulator, GntR family. (226 aa)    
Predicted Functional Partners:
Rfer_0869
Conserved hypothetical protein.
 
     0.683
Rfer_3584
Transcriptional regulator, GntR family.
 
  
 0.640
Rfer_0447
Transcriptional regulator, GntR family.
 
  
 0.619
Rfer_0872
Protein of unknown function DUF979.
 
     0.524
Rfer_0873
Protein of unknown function DUF969.
 
     0.517
Rfer_1641
Transcriptional regulator, GntR family.
 
  
 0.511
Rfer_3323
Acetolactate synthase, small subunit.
   
    0.486
pxpA
LamB/YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
     0.458
Rfer_0868
Carbamoyl-phosphate synthase L chain, ATP-binding.
 
     0.446
Rfer_0202
Transcriptional regulator, GntR family.
 
  
 0.437
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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