STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0879Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
Rfer_0457
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.576
Rfer_0341
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.555
Rfer_0880
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.554
Rfer_0882
Acetolactate synthase, large subunit; Belongs to the TPP enzyme family.
 
   
 0.527
Rfer_1639
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.522
Rfer_0881
Aminotransferase.
  
  
 0.502
Rfer_1922
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.486
Rfer_3681
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.436
Rfer_0987
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.417
Rfer_3465
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.414
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.