STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0885BFD-like (2Fe-2S)-binding protein. (464 aa)    
Predicted Functional Partners:
Rfer_0884
FAD dependent oxidoreductase.
 
 0.985
Rfer_0886
Conserved hypothetical protein.
 
  
 0.959
Rfer_0883
Extracellular solute-binding protein, family 1.
 
   
 0.907
Rfer_0887
Binding-protein-dependent transport systems inner membrane component.
 
     0.853
Rfer_0890
Transcriptional regulator, IclR family.
 
     0.843
Rfer_0889
ABC transporter related; Belongs to the ABC transporter superfamily.
 
    0.842
Rfer_0888
Binding-protein-dependent transport systems inner membrane component.
 
     0.838
Rfer_1933
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 
 0.776
Rfer_4053
FAD dependent oxidoreductase.
 
 
 0.745
Rfer_0231
FAD dependent oxidoreductase.
 
 
 0.740
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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