Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0892Hemerythrin HHE cation binding protein. (165 aa)    
Predicted Functional Partners:
Rfer_0891
Metal dependent phosphohydrolase.
  
    0.668
Rfer_1223
ABC-type transport system periplasmic component.
  
     0.590
Rfer_3041
ABC transporter.
  
     0.538
Rfer_0281
Ferredoxin.
  
  
 0.485
Rfer_0497
Oxidoreductase FAD/NAD(P)-binding.
  
  
 0.485
Rfer_0117
AAA ATPase.
 
     0.457
Rfer_0900
Anti-sigma-factor antagonist (STAS) domain protein.
 
     0.416
Rfer_0181
Pyridine nucleotide-disulphide oxidoreductase dimerisation protein.
  
     0.412
Rfer_2661
Putative transmembrane protein.
  
    0.410
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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