STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0899Response regulator receiver domain protein. (122 aa)    
Predicted Functional Partners:
Rfer_0901
CheA signal transduction histidine kinases.
 0.994
Rfer_0567
CheA signal transduction histidine kinases.
 0.969
Rfer_0898
Methyl-accepting chemotaxis sensory transducer.
 
 0.965
Rfer_0903
CheW protein.
 
 0.963
Rfer_3705
Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
 0.962
Rfer_0902
Methyl-accepting chemotaxis sensory transducer.
 
 0.957
Rfer_1888
CheC, inhibitor of MCP methylation.
  
 
 0.939
Rfer_0558
Flagellar motor switch FliN.
  
 
 0.924
Rfer_0566
Response regulator receiver domain protein.
 
0.921
Rfer_0900
Anti-sigma-factor antagonist (STAS) domain protein.
 
  
 0.919
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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