Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0900Anti-sigma-factor antagonist (STAS) domain protein. (121 aa)    
Predicted Functional Partners:
Rfer_3932
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
  
  
 0.950
Rfer_0899
Response regulator receiver domain protein.
 
  
 0.924
Rfer_1768
Multi-sensor hybrid histidine kinase.
  
  
 0.894
Rfer_1602
Conserved hypothetical protein.
  
 
 0.893
Rfer_0898
Methyl-accepting chemotaxis sensory transducer.
 
     0.888
Rfer_0901
CheA signal transduction histidine kinases.
 
     0.878
Rfer_3722
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase.
  
    0.868
Rfer_3717
Protein of unknown function DUF1078-like.
   
    0.834
Rfer_3714
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.808
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.808
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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