STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0900Anti-sigma-factor antagonist (STAS) domain protein. (121 aa)    
Predicted Functional Partners:
Rfer_3932
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
  
  
 0.946
Rfer_1768
Multi-sensor hybrid histidine kinase.
  
  
 0.923
Rfer_0899
Response regulator receiver domain protein.
 
  
 0.919
Rfer_1602
Conserved hypothetical protein.
  
 
 0.911
Rfer_0898
Methyl-accepting chemotaxis sensory transducer.
 
   
 0.892
Rfer_0901
CheA signal transduction histidine kinases.
 
   
 0.880
Rfer_3722
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase.
  
    0.830
Rfer_2935
ABC transporter related.
   
   0.796
Rfer_3916
ABC transporter related.
   
   0.796
Rfer_3717
Protein of unknown function DUF1078-like.
   
    0.785
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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