STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0909Hypothetical protein. (152 aa)    
Predicted Functional Partners:
Rfer_1854
Substrate-binding region of ABC-type glycine betaine transport system.
  
    0.609
Rfer_1875
Protein of unknown function DUF1328.
  
    0.604
Rfer_4004
Transport-associated.
  
  
 0.565
Rfer_0900
Anti-sigma-factor antagonist (STAS) domain protein.
   
  
 0.507
Rfer_3437
Hypothetical protein.
   
  
 0.507
Rfer_1256
Glycosyl transferase, family 2.
   
    0.455
Rfer_3162
Twin-arginine translocation pathway signal; Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria; Belongs to the high-potential iron-sulfur protein (HiPIP) family.
    
   0.440
Rfer_2853
Hypothetical protein.
  
 
 0.435
Rfer_4138
Cytochrome c, class I.
  
 
 0.435
Rfer_0416
Conserved hypothetical protein.
   
    0.405
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.