Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0929D-serine deaminase. (432 aa)    
Predicted Functional Partners:
Rfer_0927
Dihydroorotase.
 
   
 0.913
Rfer_0978
N-acyl-D-amino-acid deacylase.
 
   
 0.779
Rfer_0928
Transcriptional regulator, RpiR family.
 
   
 0.757
Rfer_0932
Binding-protein-dependent transport systems inner membrane component.
  
    0.680
Rfer_0930
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
       0.671
Rfer_0931
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
       0.671
Rfer_0933
Binding-protein-dependent transport systems inner membrane component.
       0.664
Rfer_0935
YjgF-like protein.
 
   
 0.618
Rfer_0969
Endoribonuclease L-PSP.
 
   
 0.594
Rfer_0934
Twin-arginine translocation pathway signal.
 
     0.515
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.