STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_09502-keto-3-deoxy-phosphogalactonate aldolase. (211 aa)    
Predicted Functional Partners:
Rfer_0949
2-keto-3-deoxygalactonate kinase.
 
  
 0.993
Rfer_0937
2-dehydro-3-deoxygalactonokinase.
 
  
 0.976
Rfer_0938
2-keto-3-deoxy-phosphogalactonate aldolase.
  
  
 
0.906
Rfer_2061
2-keto-3-deoxy-phosphogluconate aldolase.
  
  
 
0.854
Rfer_0951
Galactonate dehydratase.
 
   
 0.834
Rfer_2850
Phenylacetaldehyde:ferredoxin oxidoreductase.
     
  0.800
Rfer_0962
2-keto-3-deoxygalactonate kinase.
 
   
 0.779
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.670
Rfer_0936
PfkB.
 
  
 0.615
Rfer_0963
PfkB.
 
  
 0.615
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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