Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0960Major facilitator superfamily MFS_1. (381 aa)    
Predicted Functional Partners:
Rfer_1515
Secretion protein HlyD.
  
 
 0.595
Rfer_0644
HAD-superfamily hydrolase subfamily IIB.
 
    0.556
Rfer_3300
Uncharacterized protein UPF0065.
  
     0.523
Rfer_1543
Putative membrane protein.
  
     0.500
Rfer_1691
Uncharacterized protein UPF0065.
  
     0.442
Rfer_3213
Protein of unknown function DUF1468.
  
     0.430
Rfer_2261
Phage integrase; Belongs to the 'phage' integrase family.
  
   
 0.429
Rfer_3194
Uncharacterized protein UPF0065.
  
     0.416
Rfer_3212
Protein of unknown function DUF112, transmembrane.
  
  
 0.406
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.