Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0969Endoribonuclease L-PSP. (133 aa)    
Predicted Functional Partners:
Rfer_0968
ABC transporter related.
       0.726
Rfer_0966
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
       0.702
Rfer_0967
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
       0.702
Rfer_0970
Transcriptional regulator, IclR family.
 
     0.683
Rfer_0929
D-serine deaminase.
 
   
 0.594
Rfer_0964
D-serine deaminase.
 
   
 0.581
Rfer_0965
Extracellular solute-binding protein, family 3.
 
     0.551
Rfer_1382
Small GTP-binding protein domain.
  
 0.534
Rfer_2373
Conserved hypothetical protein.
  
 0.534
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
  
 0.534
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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