STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0976Ornithine cyclodeaminase. (323 aa)    
Predicted Functional Partners:
Rfer_1911
Aminotransferase.
    
 0.908
Rfer_4054
L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.
    
  0.903
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.818
Rfer_0977
Alanine racemase-like.
     
 0.743
Rfer_0978
N-acyl-D-amino-acid deacylase.
       0.718
Rfer_0979
6-phosphogluconate dehydrogenase, NAD-binding.
       0.718
Rfer_0982
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
       0.646
Rfer_0983
Binding-protein-dependent transport systems inner membrane component.
       0.645
Rfer_0984
Binding-protein-dependent transport systems inner membrane component.
       0.644
Rfer_0980
Class II aldolase/adducin-like.
       0.635
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.