Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Rfer_0976Ornithine cyclodeaminase. (323 aa)    
Predicted Functional Partners:
Rfer_0977
Alanine racemase-like.
     
 0.743
Rfer_0978
N-acyl-D-amino-acid deacylase.
       0.718
Rfer_0979
6-phosphogluconate dehydrogenase, NAD-binding.
       0.718
Rfer_0982
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
       0.646
Rfer_0983
Binding-protein-dependent transport systems inner membrane component.
       0.645
Rfer_0984
Binding-protein-dependent transport systems inner membrane component.
       0.644
Rfer_0980
Class II aldolase/adducin-like.
       0.635
Rfer_0981
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
       0.635
Rfer_3884
Arginase; Belongs to the arginase family.
    
 0.590
Rfer_0975
Hypothetical protein.
       0.504
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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