Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0993L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (362 aa)    
Predicted Functional Partners:
Rfer_1333
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
  
 
0.927
Rfer_0994
acyl-CoA dehydrogenase-like.
 
 
 0.783
Rfer_0995
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.663
Rfer_2593
acyl-CoA dehydrogenase-like.
 
 
 0.524
Rfer_1646
acyl-CoA dehydrogenase-like.
 
 
 0.516
Rfer_4205
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.492
Rfer_1676
MaoC-like dehydratase.
 
 
 0.462
Rfer_2478
Thiamine pyrophosphate enzyme-like TPP binding protein; Belongs to the TPP enzyme family.
 
 
 0.442
Rfer_2592
acyl-CoA dehydrogenase-like.
 
 
 0.436
Rfer_0523
acyl-CoA dehydrogenase-like.
 
 
 0.431
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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