Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1027Galactarate dehydratase. (509 aa)    
Predicted Functional Partners:
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.721
Rfer_1241
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.714
Rfer_0941
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.711
Rfer_1028
6-phosphogluconate dehydrogenase, NAD-binding.
 
  
 0.710
Rfer_1026
2-dehydro-3-deoxy-L-arabinonate dehydratase; Belongs to the DapA family.
 
   
 0.702
Rfer_1033
Transcriptional regulator, GntR family.
 
   
 0.652
Rfer_0950
2-keto-3-deoxy-phosphogalactonate aldolase.
 
  
 0.567
Rfer_1025
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.562
Rfer_3135
Amidohydrolase 2.
 
   
 0.560
Rfer_0938
2-keto-3-deoxy-phosphogalactonate aldolase.
 
  
 0.557
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.