STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1027Galactarate dehydratase. (509 aa)    
Predicted Functional Partners:
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.972
Rfer_0936
PfkB.
 
  
 0.875
Rfer_0532
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.807
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
Rfer_4033
6-phosphogluconate dehydrogenase (decarboxylating).
     
  0.800
Rfer_1028
6-phosphogluconate dehydrogenase, NAD-binding.
 
  
 0.708
Rfer_1026
2-dehydro-3-deoxy-L-arabinonate dehydratase; Belongs to the DapA family.
 
   
 0.704
Rfer_1241
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.684
Rfer_0941
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.680
Rfer_1033
Transcriptional regulator, GntR family.
 
   
 0.643
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.