STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1102Beta-glucosidase. Glycosyl Hydrolase family 1. (448 aa)    
Predicted Functional Partners:
Rfer_1104
Glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.968
Rfer_1113
Glycoside hydrolase, family 3-like.
 
  
 0.953
Rfer_1111
Beta-glucosidase.
  
  
0.907
Rfer_1099
Extracellular solute-binding protein, family 1.
 
  
 0.823
Rfer_1100
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.819
Rfer_1101
Binding-protein-dependent transport systems inner membrane component.
 
   
 0.802
Rfer_1103
ABC transporter related; Belongs to the ABC transporter superfamily.
  
  
 0.800
Rfer_1094
ABC transporter related; Belongs to the ABC transporter superfamily.
  
  
 0.515
Rfer_2837
Hypothetical protein.
   
   0.459
Rfer_0601
PTS system fructose subfamily IIA component.
      
 0.430
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.