STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1111Beta-glucosidase. (456 aa)    
Predicted Functional Partners:
Rfer_1113
Glycoside hydrolase, family 3-like.
 
  
 0.974
Rfer_1104
Glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.935
Rfer_1102
Beta-glucosidase. Glycosyl Hydrolase family 1.
  
  
0.907
Rfer_1106
Glycoside hydrolase, family 30; Belongs to the glycosyl hydrolase 30 family.
 
   
 0.612
Rfer_1110
Extracellular solute-binding protein, family 1.
  
  
 0.591
Rfer_1107
ABC transporter related; Belongs to the ABC transporter superfamily.
  
  
 0.587
Rfer_1109
Binding-protein-dependent transport systems inner membrane component.
  
  
 0.583
Rfer_1108
Binding-protein-dependent transport systems inner membrane component.
     
 0.574
Rfer_1112
Transcriptional regulator, LacI family.
    
 0.570
Rfer_1099
Extracellular solute-binding protein, family 1.
 
  
 0.525
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.