Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Rfer_1111Beta-glucosidase. (456 aa)    
Predicted Functional Partners:
Rfer_1113
Glycoside hydrolase, family 3-like.
 
  
 0.984
Rfer_1104
Glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.933
Rfer_1102
Beta-glucosidase. Glycosyl Hydrolase family 1.
  
  
0.908
Rfer_1094
ABC transporter related; Belongs to the ABC transporter superfamily.
  
  
 0.669
Rfer_0601
PTS system fructose subfamily IIA component.
      
 0.636
Rfer_0952
Binding-protein-dependent transport systems inner membrane component.
     
 0.634
Rfer_1110
Extracellular solute-binding protein, family 1.
  
  
 0.598
Rfer_1107
ABC transporter related; Belongs to the ABC transporter superfamily.
  
  
 0.595
Rfer_1106
Glycoside hydrolase, family 30; Belongs to the glycosyl hydrolase 30 family.
 
  
 0.586
Rfer_1109
Binding-protein-dependent transport systems inner membrane component.
  
  
 0.578
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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