STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1114Tryptophan halogenase. (502 aa)    
Predicted Functional Partners:
Rfer_1113
Glycoside hydrolase, family 3-like.
 
     0.880
Rfer_1115
TonB-dependent receptor.
 
     0.878
Rfer_3396
TonB-dependent receptor.
  
     0.764
Rfer_1112
Transcriptional regulator, LacI family.
 
   
 0.732
Rfer_3209
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
  
  
 0.523
Rfer_2933
Glutamate synthase (NADH) large subunit.
  
  
 0.521
Rfer_1796
Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.499
Rfer_0093
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase.
  
  
 0.459
Rfer_1424
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase.
  
  
 0.459
Rfer_0592
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.454
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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