Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_1124Transcriptional regulator, RpiR family. (282 aa)    
Predicted Functional Partners:
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
     
 0.720
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
     
 0.527
pgi
Glucose-6-phosphate isomerase.
     
 0.521
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
   
 0.500
Rfer_1123
Thioredoxin.
     
 0.494
Rfer_3100
Transcriptional regulator, RpiR family.
  
     0.485
Rfer_2061
2-keto-3-deoxy-phosphogluconate aldolase.
 
   
 0.454
Rfer_1113
Glycoside hydrolase, family 3-like.
 
  
 0.429
Rfer_3101
Peptidase T2, asparaginase 2.
  
    0.425
Rfer_3409
Peptidase T2, asparaginase 2.
  
    0.425
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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