STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1256Glycosyl transferase, family 2. (291 aa)    
Predicted Functional Partners:
Rfer_1257
Hypothetical protein.
       0.773
Rfer_1875
Protein of unknown function DUF1328.
   
    0.672
Rfer_0702
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.597
Rfer_0658
Polysaccharide export protein.
 
  
 0.553
Rfer_4004
Transport-associated.
   
    0.540
Rfer_1263
Sugar transferase.
 
  
 0.518
Rfer_3662
Glycoside hydrolase, family 16.
  
  
 0.509
Rfer_0691
Polysaccharide biosynthesis protein.
 
  
 0.494
Rfer_0909
Hypothetical protein.
   
    0.455
Rfer_1814
Hypothetical protein.
   
    0.455
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.