Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_1594Binding-protein-dependent transport systems inner membrane component. (541 aa)    
Predicted Functional Partners:
Rfer_1595
ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.989
Rfer_2758
Extracellular solute-binding protein, family 1.
 
 
 0.988
Rfer_0883
Extracellular solute-binding protein, family 1.
 
  
 0.662
Rfer_2402
Conserved hypothetical protein.
  
  
 0.651
Rfer_0889
ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.639
potA
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.635
potA-2
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.605
Rfer_3244
ABC transporter related.
 
 
 0.583
Rfer_3246
ABC transporter periplasmic binding protein, thiB subfamily.
  
  
 0.558
Rfer_3223
ABC transporter related; Belongs to the ABC transporter superfamily.
  
 
 0.541
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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