Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rfer_0093 | Rfer_0881 | Rfer_0093 | Rfer_0881 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Aminotransferase. | 0.455 |
Rfer_0093 | Rfer_1424 | Rfer_0093 | Rfer_1424 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | 0.945 |
Rfer_0093 | Rfer_1796 | Rfer_0093 | Rfer_1796 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Citrate synthase; Belongs to the citrate synthase family. | 0.940 |
Rfer_0093 | Rfer_2583 | Rfer_0093 | Rfer_2583 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.975 |
Rfer_0093 | Rfer_3270 | Rfer_0093 | Rfer_3270 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | NADH dehydrogenase (quinone). | 0.903 |
Rfer_0093 | fumC | Rfer_0093 | Rfer_2365 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.971 |
Rfer_0093 | glcB | Rfer_0093 | Rfer_3581 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.976 |
Rfer_0093 | mdh1 | Rfer_0093 | Rfer_1803 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. | 0.965 |
Rfer_0093 | mdh2 | Rfer_0093 | Rfer_2403 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. | 0.965 |
Rfer_0093 | ppc | Rfer_0093 | Rfer_1714 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. | 0.441 |
Rfer_0881 | Rfer_0093 | Rfer_0881 | Rfer_0093 | Aminotransferase. | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | 0.455 |
Rfer_0881 | Rfer_1424 | Rfer_0881 | Rfer_1424 | Aminotransferase. | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | 0.455 |
Rfer_0881 | Rfer_1796 | Rfer_0881 | Rfer_1796 | Aminotransferase. | Citrate synthase; Belongs to the citrate synthase family. | 0.892 |
Rfer_0881 | Rfer_2583 | Rfer_0881 | Rfer_2583 | Aminotransferase. | Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.817 |
Rfer_0881 | fumC | Rfer_0881 | Rfer_2365 | Aminotransferase. | Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.830 |
Rfer_0881 | mdh1 | Rfer_0881 | Rfer_1803 | Aminotransferase. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. | 0.920 |
Rfer_0881 | mdh2 | Rfer_0881 | Rfer_2403 | Aminotransferase. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. | 0.920 |
Rfer_1424 | Rfer_0093 | Rfer_1424 | Rfer_0093 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | 0.945 |
Rfer_1424 | Rfer_0881 | Rfer_1424 | Rfer_0881 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Aminotransferase. | 0.455 |
Rfer_1424 | Rfer_1796 | Rfer_1424 | Rfer_1796 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase. | Citrate synthase; Belongs to the citrate synthase family. | 0.940 |
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